cat > release_minimal/analysis/06_WGS/README.md <<'EOF' # Isolate-WGS scripts `01-02`: integration of WGS, ARG, plasmid, and sample metadata. `03-06`: species-specific core-SNP and clone-sharing analyses. `07-08`: plasmid-cluster and ARG summaries. `09-13`: preparation of blaCTX-M genetic-context and clinker inputs. `14-15`: preparation of overview-tree and core-SNP-tree annotations. EOF

cat > release_minimal/analysis/06_WGS/README.md <<'EOF' # Isolate-WGS scripts `01-02`: integration of WGS, ARG, plasmid, and sample metadata. `03-06`: species-specific core-SNP and clone-sharing analyses. `07-08`: plasmid-cluster and ARG summaries. `09-13`: preparation of blaCTX-M genetic-context and clinker inputs. `14-15`: preparation of overview-tree and core-SNP-tree annotations. EOF